Note: you might want also to check out section on Evolution

Elementary Sequence Analysis by Brian Golding (McMaster Univ.). Full lecture notes.
at: http://helix.biology.mcmaster.ca/721/outline2/outline2.html (nice and easy)

Computational Biology Seminar at the Univ. Washington. Comes with lecture notes and slides.
at: http://www.cs.washington.edu/education/courses/590bi/ (great building on your base in computation)

Workshop on Molecular Evolution (Marine Biological Laboratory). Not an on-line course, however, provides downloadable hand-outs. Advanced.
at: http://newfish.mbl.edu/Course/

Bioinformatics, set of tutorials on Entrez, BLAST and more at NCBI. You may also want to check out Coffe Break, texts in all topics come with on-line examples.
at: http://www.ncbi.nlm.nih.gov/Education/index.html

History by Fordsyke. Collection of original papers on evolution, bioinformatics and more..
at: http://post.queensu.ca/~forsdyke/homepage.htm

Bioinformatika magyarul: Miklós István jegyzete felnőtteknek:
http://ramet.elte.hu/~miklosi/Bioinformatika/bioinformatika.html